How to Build CHD@ZJU

CHD related Articles were retrieved from Pubmed, by entering keywords "coronary heart disease" and constrict the publish date from 2000/1/1 to now (2013/1/23). As a result, totally 115898 articles were found and their abstracts were downloaded for text mining. Since some articles didn't contain abstracts, only 88396 abstracts remained.

The text-mining process to get CHD related genes could be divided in to 5 following steps:

  • 1) Extracting all keywords from abstracts and ignoring those keywords start with numbers. 101402 keywords were extracted.

  • 2) Input these keywords into Gene library in ArrayTrack and find possible related genes. 4674 genes were then found.

  • 3) Put these 4674 genes again into pubmed abstracts to find related aticles. Only genes which offical name or there keyword description (such as prolactin for gene PRL) could be found in the abstract would be remained. As a result, 1247 genes were remained.

  • 4) Manually examined on the 1247 genes to validate it was acutally related to CHD. Some genes would be filtered if it represents other meanings (such as gene CAD, Entrez ID:790, carbamoyl-phosphate synthetase 2, is mostly meant coronary arterial disease in articles). 681 genes were then validated with at least one reference.

  • 5) All genes was compared with 1078 CHD genes in RGD database, and 370 genes were overlapped. These 370 genes were labels as "RGD_Supported" and the other 293 genes were labels as "REFERED". All 663 genes had supported references in CHD@ZJU which were examined by step 4.
  • How To contact Us

    Collaboration Information: Prof. Xiaohui Fan (fanxh@zju.edu.cn)

    Website using assistance : Leihong Wu (11019004@zju.edu.cn)



    Basic Information

    Gene Name: CX3CR1

    Description: chemokine (C-X3-C motif) receptor 1

    Entrez Gene ID: 1524

    SwissProt Acc Number: P49238

    RefSeq: NM_001337

    It was suspected to be CHD related:

    .."This study suggests that CX3CR1, a biomarker of obesity in this sample, constitutes a potential target for further investigation of the role of inflammation in the expression of obesity-related phenotypes."..

    From PMID: 20523302, in Journal Obesity (Silver Spring) , 2011


    References

    There were 23 potential papers with CX3CR1 and CHD.

    PMIDTitleJournalsDetails
    24307998 "CX3CR1 Receptor Polymorphisms, Th1 Cell Recruitment, and Acute Myocardial Infarction Outcome: Looking for a Link."BioMed research internationalMore Details
    22731642 Association of V249I and T280M polymorphisms in the chemokine receptor CX3CR1 gene with early onset of coronary artery disease among North Indians.Genetic testing and molecular biomarkersMore Details
    22897138 Fractalkine and its receptor (CX3CR1) in patients with stable coronary artery disease and diabetes mellitus.Metabolic syndrome and related disordersMore Details
    22313962 A role for cytomegalovirus-specific CD4+CX3CR1+ T cells and cytomegalovirus-induced T-cell immunopathology in HIV-associated atherosclerosis."AIDS (London, England)"More Details
    20523302 Association of common polymorphisms in the fractalkine receptor (CX3CR1) with obesity."Obesity (Silver Spring, Md.)"More Details
    20836883 Dual targeting of CCR2 and CX3CR1 in an arterial injury model of vascular inflammation.Thrombosis journalMore Details
    19628406 Association of polymorphisms in the chemokine receptor CX3CR1 gene with coronary artery disease.CytokineMore Details
    19439304 Genetic diversity of CX3CR1 gene and coronary artery disease: new insights through a meta-analysis.AtherosclerosisMore Details
    19587779 "Search for an association between V249I and T280M CX3CR1 genetic polymorphisms, endothelial injury and preeclampsia: the ECLAXIR study."PloS oneMore Details
    18609106 Role of the fractalkine receptor CX3CR1 polymorphisms V249I and T280M as risk factors for early-onset coronary artery disease in patients with no classic risk factors.Scandinavian journal of clinical and laboratory investigationMore Details
    17456471 Atherogenic lipids induce adhesion of human coronary artery smooth muscle cells to macrophages by up-regulating chemokine CX3CL1 on smooth muscle cells in a TNFalpha-NFkappaB-dependent manner.The Journal of biological chemistryMore Details
    17082482 The CX3C chemokine fractalkine induces vascular dysfunction by generation of superoxide anions."Arteriosclerosis, thrombosis, and vascular biology"More Details
    17329566 Chemokine regulation of atherosclerosis.Journal of leukocyte biologyMore Details
    17521710 CX3CR1 receptor is up-regulated in monocytes of coronary artery diseased patients: impact of pre-inflammatory stimuli and renin-angiotensin system modulators.Thrombosis researchMore Details
    16809547 CX3CR1 deficiency confers protection from intimal hyperplasia after arterial injury."Arteriosclerosis, thrombosis, and vascular biology"More Details
    17015796 The chemokine and chemokine receptor profile of infiltrating cells in the wall of arteries with cardiac allograft vasculopathy is indicative of a memory T-helper 1 response.CirculationMore Details
    15886814 Opposite effects of CX3CR1 receptor polymorphisms V249I and T280M on the development of acute coronary syndrome. A possible implication of fractalkine in inflammatory activation.Thrombosis and haemostasisMore Details
    16026776 Endothelial nitric oxide synthase and fractalkine chemokine receptor polymorphisms on angiographically assessed coronary atherosclerosis.Clinica chimica acta; international journal of clinical chemistryMore Details
    16224053 "Expression of fractalkine (CX3CL1) and its receptor, CX3CR1, is elevated in coronary artery disease and is reduced during statin therapy.""Arteriosclerosis, thrombosis, and vascular biology"More Details
    12969992 Fractalkine in vascular biology: from basic research to clinical disease."Arteriosclerosis, thrombosis, and vascular biology"More Details
    14581400 Smooth muscle cells in human atherosclerotic plaques express the fractalkine receptor CX3CR1 and undergo chemotaxis to the CX3C chemokine fractalkine (CX3CL1).CirculationMore Details
    12697743 Chemokine receptor mutant CX3CR1-M280 has impaired adhesive function and correlates with protection from cardiovascular disease in humans.The Journal of clinical investigationMore Details
    12234253 Cloning and functional characterization of the human fractalkine receptor promoter regions.The Biochemical journalMore Details

    NOTEs: These result is mostly from TEXT-MINING and there might have mismatches.



    PPI interactions

    There were totally 1 unique genes interacted with CX3CR1. Show PPI network

    Gene nameInteraction typereference PMIDCHD relation
    CX3CL1 Co-crystal Structure9931005|9931005,9390561 CHD related


    Involved FDA drugs

    There was no drug associated with CX3CR1